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Genbank格式的基因序列绘制基因的结构图
应用背景
NCBI上很多基因组DNA序列都有结构描述,其中关于内含子结构的描述通常是 CDS join(1..193,290..1284),表示两个外显子,中间一个是内含子位置,有些基因组DNA更复杂,内含子数目可能达到10个以上,看起来眼花缭乱。很多研究者希望把这些结构信息以图形的形式展示,一目了然,容易分析。用这个perl脚本可以方便的绘制图形,只需要把序列下载下来,输入一个命令自动绘图成功!
关键技术
计算机条件:linux系统,我是在ubuntu系统上使用的。网上下载bioperl 安装。安装很简单,bioperl下载后解压到一个盘上,形成一个文件夹。安装Bio::Graphics的方法,在ubuntu的命令行下输入 sudo perl -MCPAN -e"install Bio::Graphics" 即可自动安装。在Ubuntu安装了bioperl,Bio::Graphics后,可以cd到这些perl脚本和文件所在的文件夹下,在linux终端输入命令行, genbankplot.pl NM_172587.gb >1.png,得到的png图像双击就打开,是基因的结构图!!!注意先把NM_172587.gb 这个genbank下载的文件拷贝到bioperl文件夹下。得到的图就像1.png。
- 2022-02-10 02:56:54下载
- 积分:1
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这是一个三维立方体旋转动画,但要注意在运行可执行文件时很容易死机。...
这是一个三维立方体旋转动画,但要注意在运行可执行文件时很容易死机。-This is a three-dimensional rotating cube animation, but in which to run the executable file is very prone to crashing.
- 2022-02-20 01:57:04下载
- 积分:1
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在简单的实现
ROAM Simplistic Implementation
By Bryan Turner
brturn@bellsouth.net
January, 2000
Project file for MS Visual C++ 6.0.
Requires GLUT DLL (www.opengl.org)
Adjust program constants in Landscape.h and Utility.cpp.
MAPS:
Default map is read from HeghtXXX.raw where XXX is the MAP_SIZE
(as defined in Landscape.h). If this map is not found, the program
attempts to open "Map.ved", a Tread Marks map file. Tread Marks maps
will only work for MAP_SIZE == 1024. Also, the MULT_SCALE to view
Tread Marks maps correctly is "0.25f". (www.TreadMarks.com)
CONTROLS:
MOUSE - Hold Left Mouse Button to Rotate View Angle
Q - Change Rendering Mode (Wireframe, Lit, Fill, Texture)
O - Change View Mode (Observe, Follow, Drive, Fly)
W/S - Move forward/back
A/D - Rotate left/right (in Observe Mode only)
F - Stop Animation
R - Toggle Frustum Drawing
0/9 - More/Less Triangles per frame
1/2 - Adjust FOV-ROAM Simplistic Implementation
By Bryan Tur
- 2022-03-26 08:18:08下载
- 积分:1
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VC++ 实现的一聚类分析程序,具有简单的分析识别能力
VC++ 实现的一聚类分析程序,具有简单的分析识别能力-VC++ Realize one of the cluster analysis procedures, with a simple analysis to identify the capacity of
- 2022-10-12 01:10:03下载
- 积分:1
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体积阴影例子程序和源代码,包括Quake3等文件的加载代码。
体积阴影例子程序和源代码,包括Quake3等文件的加载代码。-shadow volume procedures and examples of source code, including Quake and other documents loading code.
- 2022-01-30 23:34:12下载
- 积分:1
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small ball along the space spiral movement of animation, a small Matlab write pr...
小球沿空间螺旋线运动的动画,matlab写的小程序-small ball along the space spiral movement of animation, a small Matlab write procedures
- 2022-02-20 22:23:50下载
- 积分:1
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sample : unicode16 transfer to UTF8
sample : unicode16 transfer to UTF8
- 2022-09-03 16:30:03下载
- 积分:1
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图像平移在本程序中,移出去的部分,填充以白色
图像平移在本程序中,移出去的部分,填充以白色-images in the translation process, the shift away, filled with white
- 2022-05-22 13:33:24下载
- 积分:1
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在指纹识别的matlab源代码,希望对大家有用…
指纹识别的matlab源代码,希望对大家有用,欢迎下载。-Fingerprint recognition matlab source code, in the hope that useful to everybody, welcome to download.
- 2022-11-28 20:05:03下载
- 积分:1
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压缩图像数据后的解压缩并显示的程序,自己编的,厉害吧
压缩图像数据后的解压缩并显示的程序,自己编的,厉害吧-compressed image data after the decompression and display procedures, their own series, it formidable
- 2022-07-07 05:59:28下载
- 积分:1